Package: resevol 0.4.1.1

resevol: Simulate Agricultural Production and Evolution of Pesticide Resistance

Simulates individual-based models of agricultural pest management and the evolution of pesticide resistance. Management occurs on a spatially explicit landscape that is divided into an arbitrary number of farms that can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest genomes are modelled in a way that allows for any number of pest traits with an arbitrary covariance structure that is constructed using an evolutionary algorithm in the mine_gmatrix() function. Simulations are then run using the run_farm_sim() function. This package thereby allows for highly mechanistic social-ecological models of the evolution of pesticide resistance under different types of crop rotation and pesticide application regimes.

Authors:A. Bradley Duthie [aut, cre], Rose McKeon [aut, ctr], Rosie Mangan [ctr], Luc Bussiére [ctr], Matthew Tinsley [ctr]

resevol_0.4.1.1.tar.gz
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resevol_0.4.1.1.tgz(r-4.6-x86_64)resevol_0.4.1.1.tgz(r-4.6-arm64)resevol_0.4.1.1.tgz(r-4.5-x86_64)resevol_0.4.1.1.tgz(r-4.5-arm64)
resevol_0.4.1.1.tar.gz(r-4.7-arm64)resevol_0.4.1.1.tar.gz(r-4.7-x86_64)resevol_0.4.1.1.tar.gz(r-4.6-arm64)resevol_0.4.1.1.tar.gz(r-4.6-x86_64)
resevol_0.4.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
resevol/json (API)

# Install 'resevol' in R:
install.packages('resevol', repos = c('https://bradduthie.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bradduthie/resevol/issues

Pkgdown/docs site:https://bradduthie.github.io

On CRAN:

Conda:

5.26 score 3 stars 1 scripts 341 downloads 6 exports 0 dependencies

Last updated from:07c48416af. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK93
linux-devel-x86_64OK107
source / vignettesOK174
linux-release-arm64OK83
linux-release-x86_64OK112
macos-release-arm64OK95
macos-release-x86_64OK441
macos-oldrel-arm64OK100
macos-oldrel-x86_64OK382
windows-devel-arm64OK401
windows-devel-x86_64OK124
windows-release-arm64OK359
windows-release-x86_64OK92
windows-oldrel-x86_64OK184
wasm-releaseOK78

Exports:individuals_colnamesinitialise_indsmake_landscapemine_gmatrixrun_farm_simstress_test

Dependencies:

Pesticide thresholds
Introduction | Using thresholds | Conclusion
Rendered frompesticide_thresholds.Rmdusingknitr::rmarkdown

Last update: 2025-05-01
Started: 2025-05-01

Advanced techniques
Introduction | Initialising pest genomes | Running simulations | Simulation 1 | Custom pesticide and crop rotation | Running simulation 1 | Simulation 1 output | Simulation 2 | Conclusion | Literature Cited
Rendered fromadvanced_techniques.Rmdusingknitr::rmarkdown

Last update: 2025-05-01
Started: 2022-08-01

resevol: an R package for spatially explicit models of pesticide resistance given evolving pest genomes
Abstract | Introduction | Covarying pest quantitative traits | Simulating landscape-level pesticide resistance | Landscape | Pest ecology | Pest evolution | Simulation output | Example of individual-based simulations | Conclusions | Acknowledgements | Authors contributions | Availability | References
Rendered fromresevol.Rmdusingknitr::rmarkdown

Last update: 2025-05-01
Started: 2021-09-09

The evolutionary algorithm
Introduction | Key data structures used | General overview of the evolutionary algorithm | Initialisation | Crossover | Mutation | Fitness evaluation | Tournament selection | Termination | Haploid and diploid individuals | Literature Cited
Rendered fromevolutionary_algorithm.Rmdusingknitr::rmarkdown

Last update: 2025-05-01
Started: 2021-09-09