Package: resevol 0.3.4.0

resevol: Simulate Agricultural Production and Evolution of Pesticide Resistance

Simulates individual-based models of agricultural pest management and the evolution of pesticide resistance. Management occurs on a spatially explicit landscape that is divided into an arbitrary number of farms that can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest genomes are modelled in a way that allows for any number of pest traits with an arbitrary covariance structure that is constructed using an evolutionary algorithm in the mine_gmatrix() function. Simulations are then run using the run_farm_sim() function. This package thereby allows for highly mechanistic social-ecological models of the evolution of pesticide resistance under different types of crop rotation and pesticide application regimes.

Authors:A. Bradley Duthie [aut, cre], Rose McKeon [aut, ctr], Rosie Mangan [ctr], Luc Bussiére [ctr], Matthew Tinsley [ctr]

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resevol.pdf |resevol.html✨
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NEWS

# Install 'resevol' in R:
install.packages('resevol', repos = c('https://bradduthie.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bradduthie/resevol/issues

Pkgdown site:https://bradduthie.github.io

On CRAN:

4.65 score 3 stars 1 scripts 175 downloads 5 exports 0 dependencies

Last updated 1 years agofrom:e5c10e2d44. Checks:11 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 07 2025
R-4.5-win-x86_64OKFeb 07 2025
R-4.5-mac-x86_64OKFeb 07 2025
R-4.5-mac-aarch64OKFeb 07 2025
R-4.5-linux-x86_64OKFeb 07 2025
R-4.4-win-x86_64OKFeb 07 2025
R-4.4-mac-x86_64OKFeb 07 2025
R-4.4-mac-aarch64OKFeb 07 2025
R-4.3-win-x86_64OKFeb 07 2025
R-4.3-mac-x86_64OKFeb 07 2025
R-4.3-mac-aarch64OKFeb 07 2025

Exports:initialise_indsmake_landscapemine_gmatrixrun_farm_simstress_test

Dependencies:

Advanced techniques

A Bradley Duthie

Rendered fromadvanced_techniques.Rmdusingknitr::knitron Feb 07 2025.

Last update: 2022-08-06
Started: 2022-08-01

resevol: an R package for spatially explicit models of pesticide resistance given evolving pest genomes

| A. Bradley Duthie$^{1,4}$, Rosie Mangan$^{1}$, C. Rose McKeon$^{1}$, | Matthew C. Tinsley$^{1}$, and Luc F. Bussière$^{2,3}$

Rendered fromresevol.Rmdusingknitr::knitron Feb 07 2025.

Last update: 2023-07-17
Started: 2021-09-09

The evolutionary algorithm

A Bradley Duthie

Rendered fromevolutionary_algorithm.Rmdusingknitr::knitron Feb 07 2025.

Last update: 2022-08-06
Started: 2021-09-09